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| cct.* |
|---|
| cct.Constants | ||
|---|---|---|
public static final double |
DEGREES_TO_RADIANS |
0.017453292519943295 |
public static final double |
ONE_BOHR |
0.529177249 |
public static final float |
ONE_BOHR_FLOAT |
0.5291772484779358f |
public static final double |
RADIANS_TO_DEGREES |
57.29577951308232 |
| cct.GlobalSettings | ||
|---|---|---|
public static final java.lang.String |
CCT_PROPERTY_FILE |
"cct/cct.properties" |
static final java.lang.String |
defaultFragmentDictionary |
"defaultFragments.dic" |
static final java.lang.String |
defaultSolventDictionary |
"defaultSolvent.dic" |
public static final java.lang.String |
FORMATS_XML_FILE |
"cct/formats.xml" |
static final boolean |
New_Database |
true |
static final boolean |
PublicRelease |
false |
| cct.adf.* |
|---|
| cct.adf.ADF | ||
|---|---|---|
static final float |
DEGREES_TO_RADIANS |
0.01745329238474369f |
static final java.lang.String |
FF_LABEL_PROP |
"Adf FF Label" |
static final java.lang.String |
MM_TYPE_PROP |
"Adf MM Type" |
static final double |
ONE_BOHR |
0.529177249 |
| cct.amber.* |
|---|
| cct.amber.AmberUtilities | ||
|---|---|---|
public static final java.lang.String |
AmberAtomFlags |
"Amber Atom Flags" |
| cct.amber.Sander8JobControl | ||
|---|---|---|
public static final int |
TYPE_FLOAT |
1 |
public static final int |
TYPE_INTEGER |
0 |
public static final int |
TYPE_STRING |
2 |
public static final int |
TYPE_UNDEFINED |
3 |
| cct.amber.Sander8Start | ||
|---|---|---|
static final java.lang.String |
VERSION_8 |
"8" |
static final java.lang.String |
VERSION_9 |
"9" |
| cct.amber.Sander9JobControl | ||
|---|---|---|
public static final int |
TYPE_FLOAT |
1 |
public static final int |
TYPE_INTEGER |
0 |
public static final int |
TYPE_STRING |
2 |
| cct.amber.SanderResourcesEval | ||
|---|---|---|
static final java.lang.String |
platf_01 |
"SGI Altix 3700 Bx2" |
| cct.database.* |
|---|
| cct.database.DatabaseAccess | ||
|---|---|---|
public static final java.lang.String |
COLUMN_COUNT |
"COLUMN_COUNT" |
public static final java.lang.String |
COLUMN_NAME |
"COLUMN_NAME" |
public static final java.lang.String |
COLUMN_TYPE |
"COLUMN_TYPE" |
| cct.database.TablesDescription | ||
|---|---|---|
public static final java.lang.String |
basisSetsNameKey |
"BSName" |
public static final java.lang.String |
BasisSetsTable |
"BasisSets" |
public static final java.lang.String |
methodDFTPKey |
"IsDFT" |
public static final java.lang.String |
methodEffectiveCorePKey |
"IsEffectiveCoreP" |
public static final java.lang.String |
methodExpKey |
"IsExperiment" |
public static final java.lang.String |
methodFixedBasisKey |
"IsFixedBasis" |
public static final java.lang.String |
methodNameKey |
"MethodName" |
public static final java.lang.String |
methodNotesKey |
"Notes" |
public static final java.lang.String |
MethodsTable |
"Methods" |
public static final java.lang.String |
moleculeAliasesKey |
"Aliases" |
public static final java.lang.String |
moleculeChargeKey |
"Charge" |
public static final java.lang.String |
moleculeFormulaKey |
"Formula" |
public static final java.lang.String |
moleculeIdKey |
"Molec_Id" |
public static final java.lang.String |
moleculeIsModelKey |
"IsModel" |
public static final java.lang.String |
moleculeMultiplicityKey |
"Multiplicity" |
public static final java.lang.String |
moleculeNameKey |
"MolName" |
public static final java.lang.String |
moleculeNotesKey |
"Notes" |
public static final java.lang.String |
MoleculeTable |
"Molecules" |
public static final java.lang.String |
moleculeUserKey |
"User" |
public static final java.lang.String |
moleculeWeightKey |
"Weight" |
public static final java.lang.String |
propertiesMethodKey |
"MethodName" |
public static final java.lang.String |
propertiesNameKey |
"PropName" |
public static final java.lang.String |
propertiesNotesKey |
"Notes" |
public static final java.lang.String |
propertiesStructId |
"Struct_Id" |
public static final java.lang.String |
PropertiesTable |
"Properties" |
public static final java.lang.String |
PropertiesTypeTable |
"Prop_types" |
public static final java.lang.String |
propertiesValueKey |
"Value" |
public static final java.lang.String |
propertiesVectorKey |
"ManyValues" |
public static final java.lang.String |
PropertyTypeIsFloatKey |
"IsFloat" |
public static final java.lang.String |
PropertyTypeIsTextKey |
"IsText" |
public static final java.lang.String |
PropertyTypeIsVectorKey |
"IsVector" |
public static final java.lang.String |
PropertyTypeNameKey |
"PropName" |
public static final java.lang.String |
PropertyTypeNotesKey |
"Notes" |
public static final java.lang.String |
structureIdKey |
"Struct_Id" |
public static final java.lang.String |
structureKey |
"Structure3d" |
public static final java.lang.String |
structureNameKey |
"StrName" |
public static final java.lang.String |
structureNotesKey |
"Notes" |
public static final java.lang.String |
StructureTable |
"Structures" |
public static final java.lang.String |
structureUserKey |
"User" |
| cct.dialogs.* |
|---|
| cct.dialogs.J3DTabbedWorld | ||
|---|---|---|
public static final int |
MULTIPLE_MOLECULES |
1 |
public static final int |
SINGLE_MOLECULE |
0 |
| cct.gamess.* |
|---|
| cct.gamess.Gamess | ||
|---|---|---|
static final java.lang.String |
basisSection |
"$BASIS" |
static final int |
CART |
2 |
static final java.lang.String |
cidetSection |
"$CIDET" |
static final java.lang.String |
cidrtSection |
"$CIDRT" |
static final java.lang.String |
ciinpSection |
"$CIINP" |
static final java.lang.String |
cisortSection |
"$CISORT" |
static final java.lang.String |
commentSection |
"!" |
static final java.lang.String |
controlSection |
"$CONTRL" |
static final java.lang.String |
cphfSection |
"$CPHF" |
static final java.lang.String |
dataSection |
"$DATA" |
static final float |
DEGREES_TO_RADIANS |
0.01745329238474369f |
static final java.lang.String |
detSection |
"$DET" |
static final java.lang.String |
dipdrSection |
"$DIPDR" |
static final java.lang.String |
disbsSection |
"$DISBS" |
static final java.lang.String |
disrepSection |
"$DISREP" |
static final java.lang.String |
drcSection |
"$DRC" |
static final java.lang.String |
drtSection |
"$DRT" |
static final java.lang.String |
ecpSection |
"$ECP" |
static final java.lang.String |
efieldSection |
"$EFIELD" |
static final java.lang.String |
efragSection |
"$EFRAG" |
static final java.lang.String |
eldensSection |
"$ELDENS" |
static final java.lang.String |
elfldgSection |
"$ELFLDG" |
static final java.lang.String |
elmonSection |
"$ELMOM" |
static final java.lang.String |
elpotSection |
"$ELPOT" |
static final java.lang.String |
endSection |
"$END" |
static final java.lang.String |
ffcalcSection |
"$FFCALC" |
static final java.lang.String |
fgrrplSection |
"$FRGRPL" |
static final java.lang.String |
forceSection |
"$FORCE" |
static final java.lang.String |
fragnameSection |
"$FRAGNAME" |
static final java.lang.String |
gradSection |
"$GRAD" |
static final java.lang.String |
gridSection |
"$GRID" |
static final java.lang.String |
guessSection |
"$GUESS" |
static final java.lang.String |
gugdiaSection |
"$GUGDIA" |
static final java.lang.String |
gugdm2Section |
"$GUGDM2" |
static final java.lang.String |
gugdmSection |
"$GUGDM" |
static final java.lang.String |
gugemSection |
"$GUGEM" |
static final java.lang.String |
hessSection |
"$HESS" |
static final int |
HINT |
1 |
static final java.lang.String |
intgrlSection |
"$INTGRL" |
static final java.lang.String |
ircSection |
"$IRC" |
static final java.lang.String |
lagranSection |
"$LAGRAN" |
static final java.lang.String |
libeSection |
"$LIBE" |
static final java.lang.String |
localSection |
"$LOCAL" |
static final int |
LOOKING_FOR_SECTION |
0 |
static final int |
LOOKING_FOR_SWITCH |
1 |
static final int |
LOOKING_FOR_SWITCH_VALUE |
2 |
static final java.lang.String |
massSection |
"$MASS" |
static final java.lang.String |
mcqdptSection |
"$MCQDPT" |
static final java.lang.String |
mcscfSection |
"$MCSCF" |
static final java.lang.String |
molgrfSection |
"$MOLGRF" |
static final java.lang.String |
morokmSection |
"$MOROKM" |
static final java.lang.String |
mp2Section |
"$MP2" |
static final java.lang.String |
newcavSection |
"$NEWCAV" |
static final double |
ONE_BOHR |
0.529177249 |
static final java.lang.String |
pcmcavSection |
"$PCMCAV" |
static final java.lang.String |
pcmSection |
"$PCM" |
static final java.lang.String |
pdcSection |
"$PDC" |
static final java.lang.String |
pointsSection |
"$POINTS" |
static final int |
READING_COMMENT |
3 |
static final java.lang.String |
scfmiSection |
"$SCFMI" |
static final java.lang.String |
scfSection |
"$SCF" |
static final java.lang.String |
scrfSection |
"$SCRF" |
static final java.lang.String |
statptSection |
"$STATPT" |
static final java.lang.String |
stoneSection |
"$STONE" |
static final java.lang.String |
surfSection |
"$SURF" |
static final java.lang.String |
systemSection |
"$SYSTEM" |
static final java.lang.String |
tdhfSection |
"$TDHF" |
static final java.lang.String |
transSection |
"$TRANS" |
static final java.lang.String |
transtSection |
"$TRANST" |
static final java.lang.String |
trfdm2Section |
"$TRFDM2" |
static final java.lang.String |
trudgeSection |
"$TRUDGE" |
static final java.lang.String |
trurstSection |
"$TRURST" |
static final java.lang.String |
twoeiSection |
"$TWOEI" |
static final int |
UNIQUE |
0 |
static final java.lang.String |
vecSection |
"$VEC" |
static final java.lang.String |
vibSection |
"$VIB" |
static final java.lang.String |
zmatSection |
"$ZMAT" |
static final int |
ZMT |
3 |
static final int |
ZMTMPC |
4 |
| cct.gamess.GamessOutput | ||
|---|---|---|
static final float |
ONE_BOHR_FLOAT |
0.5291772484779358f |
| cct.gaussian.* |
|---|
| cct.gaussian.G03MDTrajectory | ||
|---|---|---|
public static final java.lang.String |
TOTAL_ENERGY_KEY |
"Total energy (au)" |
| cct.gaussian.Gaussian | ||
|---|---|---|
public final float |
DEGREES_TO_RADIANS |
0.01745329238474369f |
public static final java.lang.String |
LINK_ZERO_COMMANDS_KEY |
"GaussianLinkZeroCommand" |
static final java.lang.String |
link0_CHK |
"%CHK" |
static final java.lang.String |
link0_D2E |
"%D2E" |
static final java.lang.String |
link0_INT |
"%INT" |
static final java.lang.String |
link0_KJOB |
"%KJOB" |
static final java.lang.String |
link0_LINDAWORKERS |
"%LINDAWORKERS" |
static final java.lang.String |
link0_MEM |
"%MEM" |
static final java.lang.String |
link0_NOSAVE |
"%NOSAVE" |
static final java.lang.String |
link0_NPROC |
"%NPROC" |
static final java.lang.String |
link0_NPROCLINDA |
"%NPROCLINDA" |
static final java.lang.String |
link0_NPROCSHARED |
"%NPROCSHARED" |
static final java.lang.String |
link0_RWF |
"%RWF" |
static final java.lang.String |
link0_SAVE |
"%SAVE" |
static final java.lang.String |
link0_SUBST |
"%SUBST" |
public static final java.lang.String |
MOLEC_SPECS_KEY |
"GaussianMoleculeSpec" |
public static final java.lang.String |
NUMBER_OF_ATOMS_KEY |
"GaussianNumberOfAtoms" |
public static final java.lang.String |
ROUTE_COMMANDS_KEY |
"GaussianRouteCommand" |
| cct.gaussian.GaussianCube | ||
|---|---|---|
static final double |
ONE_BOHR |
0.529177249 |
static final float |
ONE_BOHR_FLOAT |
0.5291772484779358f |
| cct.gaussian.GaussianKeywords | ||
|---|---|---|
public static final int |
JOB_UNKNOWN |
0 |
static final int |
KEYWORD_BASIS_SET |
3 |
static final int |
KEYWORD_GEOM |
4 |
static final int |
KEYWORD_JOB_TYPE |
1 |
static final int |
KEYWORD_METHOD |
2 |
static final int |
KEYWORD_UNKNOWN |
0 |
static final int |
WAVEFUNCTION_R |
0 |
static final int |
WAVEFUNCTION_RO |
2 |
static final int |
WAVEFUNCTION_U |
1 |
| cct.gaussian.GaussianMolecule | ||
|---|---|---|
public static final float |
DEGREES_TO_RADIANS |
0.01745329238474369f |
| cct.gaussian.GaussianOutput | ||
|---|---|---|
public static final java.lang.String |
INPUT_ORIENTATION_KEY |
"Input orientation" |
public static final java.lang.String |
STANDARD_ORIENTATION_KEY |
"Standard orientation" |
static final int |
VERSION_G94 |
1 |
static final int |
VERSION_G98 |
2 |
static final int |
VERSION_UNKNOWN |
0 |
public static final java.lang.String |
Z_MATRIX_ORIENTATION_KEY |
"Z-Matrix orientation" |
| cct.gaussian.ui.SaveG03GJFDialog | ||
|---|---|---|
static final java.lang.String |
lastPWDKey |
"lastPWD" |
| cct.grid.* |
|---|
| cct.grid.CheckPoint | ||
|---|---|---|
static final java.lang.String |
inputStatusPrefix |
"local" |
static final java.lang.String |
outputStatusPrefix |
"local" |
| cct.grid.CheckPointInterface | ||
|---|---|---|
public static final java.lang.String |
batchJobTag |
"batchJob" |
public static final java.lang.String |
computerTag |
"computer" |
public static final java.lang.String |
executableTag |
"executable" |
public static final java.lang.String |
handleTag |
"handle" |
public static final java.lang.String |
inputFilesTag |
"inputFiles" |
public static final java.lang.String |
JOB_STATUS_DONE |
"DONE" |
public static final java.lang.String |
JOB_STATUS_PENDING |
"PENDING" |
public static final java.lang.String |
JOB_STATUS_UNKNOWN |
"UNKNOWN" |
public static final java.lang.String |
jobNameTag |
"jobName" |
public static final java.lang.String |
JobSpecificationTag |
"JobSpecification" |
public static final java.lang.String |
localDirectoryTag |
"localDirectory" |
public static final java.lang.String |
localExecutableTag |
"localExecutable" |
public static final java.lang.String |
outputFilesTag |
"outputFiles" |
public static final java.lang.String |
overallJobStatusTag |
"jobStatus" |
public static final int |
PARSE_JOB_SPECIFICATION_TAGS |
3 |
public static final int |
PARSE_OUTPUT_FILES_TAGS |
4 |
public static final int |
PARSE_SERVICE_TAGS |
2 |
public static final int |
PARSE_TASK_TAGS |
1 |
public static final java.lang.String |
programTag |
"program" |
public static final java.lang.String |
providerTag |
"provider" |
public static final java.lang.String |
remoteDirectoryTag |
"remoteDirectory" |
public static final java.lang.String |
serviceTag |
"service" |
public static final java.lang.String |
softwareTag |
"software" |
public static final java.lang.String |
statusTag |
"status" |
public static final java.lang.String |
stdErrorTag |
"stdError" |
public static final java.lang.String |
stdOutputTag |
"stdOutput" |
public static final java.lang.String |
submittedTimeTag |
"submittedTime" |
public static final java.lang.String |
tasksTag |
"tasks" |
public static final java.lang.String |
taskTag |
"task" |
| cct.grid.JobDescription | ||
|---|---|---|
static final java.lang.String |
ABS_PATH_EXECUTABLE |
"absPathExecutable" |
static final java.lang.String |
ADDRESS |
"Address" |
static final java.lang.String |
ALLLORNONE |
"allOrNone" |
static final java.lang.String |
ARGUMENT |
"argument" |
static final java.lang.String |
CLUSTER_ADDRESS |
"clusterAddress" |
static final java.lang.String |
COUNT |
"count" |
static final java.lang.String |
DESTINATION_URL |
"destinationUrl" |
static final java.lang.String |
DIRECTORY |
"directory" |
static final java.lang.String |
ENVIRONMENT |
"environment" |
static final java.lang.String |
EXECUTABLE |
"executable" |
static final java.lang.String |
EXTENSIONS |
"extensions" |
static final java.lang.String |
FACTORYENDPOINT |
"factoryEndpoint" |
static final java.lang.String |
FILECLEANUP |
"fileCleanUp" |
static final java.lang.String |
FILESTAGEIN |
"fileStageIn" |
static final java.lang.String |
FILESTAGEOUT |
"fileStageOut" |
static final java.lang.String |
HOSTCOUNT |
"hostCount" |
static final java.lang.String |
JOB |
"job" |
static final java.lang.String |
JOBCREDENTIAL |
"jobCredentialEndpoint" |
static final java.lang.String |
JOBFS |
"jobfs" |
static final java.lang.String |
JOBTYPE |
"jobType" |
static final java.lang.String |
LIBRARYPATH |
"libraryPath" |
static final java.lang.String |
LOCAL_DIRECTORY |
"localDirectory" |
static final java.lang.String |
LOCAL_EXECUTABLE |
"localExecutable" |
static final java.lang.String |
MAXCPUTIME |
"maxCpuTime" |
static final java.lang.String |
MAXMEMORY |
"maxMemory" |
static final java.lang.String |
MAXTIME |
"maxTime" |
static final java.lang.String |
MAXWALLTIME |
"maxWallTime" |
static final java.lang.String |
MINMEMORY |
"minMemory" |
static final java.lang.String |
MULTIJOB |
"multiJob" |
static final java.lang.String |
PBS_JOB_SCRIPT |
"pbsjobscript" |
static final java.lang.String |
PBS_OTHER |
"pbsother" |
public static final java.lang.String |
PBS_SCHEDULER |
"pbs" |
static final java.lang.String |
POSTPROCESS_DIRECTIVES |
"postProcessDirectives" |
static final java.lang.String |
PREPROCESS_DIRECTIVES |
"preProcessDirectives" |
static final java.lang.String |
PROJECT |
"project" |
static final java.lang.String |
PROVIDER_OBJECT |
"providerObject" |
static final java.lang.String |
QUEUE |
"queue" |
static final java.lang.String |
RESOURCE_ID |
"ResourceID" |
static final java.lang.String |
SERVICE_PROVIDER |
"serviceProvider" |
static final java.lang.String |
SERVICELEVEL |
"serviceLevelAgreement" |
static final java.lang.String |
SHELL |
"shell" |
static final java.lang.String |
SOFTWARE |
"software" |
static final java.lang.String |
SOURCE_URL |
"sourceUrl" |
static final java.lang.String |
STAGINGCREDENTIAL |
"stagingCredentialEndpoint" |
static final java.lang.String |
STDERR |
"stderr" |
static final java.lang.String |
STDIN |
"stdin" |
static final java.lang.String |
STDOUT |
"stdout" |
static final java.lang.String |
TRANSFER |
"transfer" |
static final java.lang.String |
transferPrefix |
"transfer" |
static final java.lang.String |
USE_GASS |
"useGASS" |
| cct.grid.ParseCheckpointFile | ||
|---|---|---|
static final java.lang.String |
CHECKPOINT_FILE |
"checkpointFile" |
| cct.grid.TaskProvider | ||
|---|---|---|
public static final java.lang.String |
CCT_PROVIDER_PROPERTY_FILE |
"cct-provider.properties" |
public static final java.lang.String |
GLOBUS_2_PROVIDER |
"gt2" |
public static final java.lang.String |
GLOBUS_4_PROVIDER |
"gt4" |
public static final java.lang.String |
LOCAL_PROVIDER |
"local" |
public static final java.lang.String |
SSH_PROVIDER |
"ssh" |
| cct.grid.TaskScheduler | ||
|---|---|---|
public static final java.lang.String |
FORK_SCHEDULER |
"fork" |
public static final java.lang.String |
PBS_SCHEDULER |
"pbs" |
| cct.grid.ui.JobStatusDialog | ||
|---|---|---|
public static final int |
JSD_DOWNLOAD_JOBS |
3 |
public static final int |
JSD_KILL_JOBS |
2 |
public static final int |
JSD_NO_TASK |
0 |
public static final int |
JSD_QUERY_STATUS |
1 |
| cct.grid.ui.JobStatusPanel | ||
|---|---|---|
static final java.lang.String |
helpText |
"Use cntrl or shfit keys and mouse to select/unselect the rows" |
| cct.grid.ui.PBS_Panel | ||
|---|---|---|
static final java.lang.String |
cpuKey |
"cpu" |
static final java.lang.String |
jobfsKey |
"jobfs" |
static final java.lang.String |
memoryKey |
"memory" |
static final java.lang.String |
projectKey |
"project" |
static final java.lang.String |
queueKey |
"queue" |
static final java.lang.String |
softwareKey |
"software" |
static final java.lang.String |
timeKey |
"time" |
| cct.grid.ui.PBSPanel | ||
|---|---|---|
static final java.lang.String |
cpuKey |
"cpu" |
static final java.lang.String |
CUSTOM_PROPERTY_FILE |
"custom.properties" |
static final java.lang.String |
DEFAULT_QUEUE |
"defaultQueue" |
static final java.lang.String |
DIVIDER |
"@" |
static final java.lang.String |
ENABLE_EDIT_EXTENSIONS |
"enableEditExtensions" |
static final java.lang.String |
ENABLE_EDIT_QUEUE |
"enableEditQueue" |
static final java.lang.String |
ENABLE_EXTENSIONS |
"enableExtensions" |
static final java.lang.String |
jobfsKey |
"jobfs" |
static final java.lang.String |
memoryKey |
"memory" |
static final java.lang.String |
projectKey |
"project" |
static final java.lang.String |
queueKey |
"queue" |
static final java.lang.String |
softwareKey |
"software" |
static final java.lang.String |
timeKey |
"time" |
| cct.grid.ui.ResourcesPanel | ||
|---|---|---|
public static final java.lang.String |
HOURS_TIME_UNITS |
"Hours" |
public static final java.lang.String |
IN_GIGABYTES |
"Gb" |
public static final java.lang.String |
IN_MEGABYTES |
"Mb" |
public static final java.lang.String |
MINUTES_TIME_UNITS |
"Mins" |
public static final java.lang.String |
SECONDS_TIME_UNITS |
"Secs" |
| cct.grid.ui.gaussian.SubmitGaussianPanel | ||
|---|---|---|
static final java.lang.String |
executableKey |
"executableName" |
static final java.lang.String |
gaussianExecutable |
"g03" |
static final java.lang.String |
gaussianOutputFileTag |
"gaussianOutput" |
static final java.lang.String |
inputFilePattern |
"%input%" |
static final java.lang.String |
localDirKey |
"localDir" |
static final java.lang.String |
outputFilePattern |
"%output%" |
static final java.lang.String |
remoteDirKey |
"remoteDir" |
static final java.lang.String |
scriptContentKey |
"scriptContent" |
static final java.lang.String |
softwareName |
"Gaussian" |
| cct.gromacs.* |
|---|
| cct.gromacs.Gromacs | ||
|---|---|---|
static final java.lang.String |
DefaultGromacsAtomMapFile |
"GromacsAtomMap.txt" |
| cct.gulp.* |
|---|
| cct.gulp.Gulp | ||
|---|---|---|
static final double |
DEGREES_TO_RADIANS |
0.017453292519943295 |
static final java.lang.String |
GULP_SPECIES_TYPE_SPECIFIER |
"Gulp-species-type-specifier" |
static final double |
ONE_BOHR |
0.529177249 |
| cct.interfaces.* |
|---|
| cct.interfaces.AtomInterface | ||
|---|---|---|
public static final java.lang.String |
AMBER_NAME |
"AmberName" |
public static final java.lang.String |
AMBER_TYPE_INDEX |
"AmberTypeIndex" |
public static final java.lang.String |
AMBIENT_RGB_COLOR |
"_AmbientRGBColor" |
public static final java.lang.String |
ATOMIC_CHARGE |
"AtomicCharge" |
public static final java.lang.String |
CCT_ATOM_TYPE |
"CCTAtomType" |
public static final float |
COVALENT_TO_GRADIUS_FACTOR |
0.5f |
public static final java.lang.String |
DIFFUSE_RGB_COLOR |
"_DiffuseRGBColor" |
public static final java.lang.String |
GR_RADIUS |
"GRadius" |
public static final java.lang.String |
NAME |
"Name" |
public static final java.lang.String |
PICKABILITY |
"Pickability" |
public static final int |
RENDER_POINT |
1 |
public static final int |
RENDER_SMART_POINT |
2 |
public static final int |
RENDER_SPHERE |
0 |
public static final java.lang.String |
RENDERING_STYLE |
"RenderingStyle" |
public static final java.lang.String |
RGB_COLOR |
"RGBColor" |
public static final java.lang.String |
SPECULAR_RGB_COLOR |
"_SpecularRGBColor" |
public static final java.lang.String |
SYBYL_TYPE |
"Sybyl_Type" |
public static final java.lang.String |
VISIBLE |
"Visible" |
| cct.interfaces.BondInterface | ||
|---|---|---|
public static final int |
BICOLOR |
1 |
public static final java.lang.String |
COLOR_SCHEME |
"ColorScheme" |
public static final int |
CYLINDER_BICOLOR |
1 |
public static final int |
CYLINDER_MONOCOLOR |
0 |
public static final java.lang.String |
CYLINDER_RADIUS |
"BondRadius" |
public static final float |
DEFAULT_BONDS_AND_STICKS_RADIUS |
0.20000000298023224f |
public static final float |
DEFAULT_STICKS_RADIUS |
0.15000000596046448f |
public static final int |
LINE_BICOLOR |
3 |
public static final int |
LINE_MONOCOLOR |
2 |
public static final int |
MONOCOLOR |
0 |
public static final int |
RENDER_CYLINDER |
0 |
public static final int |
RENDER_LINE |
1 |
public static final java.lang.String |
RENDERING_STYLE |
"RenderingStyle" |
public static final java.lang.String |
RGB_COLOR |
"RGBColor" |
public static final java.lang.String |
VISIBLE |
"Visible" |
| cct.interfaces.ForceFieldInterface | ||
|---|---|---|
public static final int |
CONSTANT_DIELECTRIC_FUNCTION |
0 |
public static final int |
DISTANCE_DIELECTRIC_FUNCTION |
1 |
| cct.interfaces.HelperInterface | ||
|---|---|---|
public static final java.lang.String |
JMD_ADD_ATOM_ID |
"editing.adding.atom" |
public static final java.lang.String |
JMD_ADD_FRAGMENT_ID |
"editing.adding.frag" |
public static final java.lang.String |
JMD_ADD_MOLECULE_ID |
"editing.adding.molec" |
public static final java.lang.String |
JMD_MANAGE_GAUSSIAN_CUBES_ID |
"managing.gaussian.cubes" |
public static final java.lang.String |
JMD_MANAGE_GRAPHICS_OBJECTS_ID |
"managing.graphics.objects" |
public static final java.lang.String |
JMD_MODIFY_ANGLE_ID |
"editing.modifying.angle" |
public static final java.lang.String |
JMD_MODIFY_BOND_ID |
"editing.modifying.bond" |
public static final java.lang.String |
JMD_MODIFY_TORSION_ID |
"editing.modifying.torsion" |
public static final java.lang.String |
JMD_SELECT_ATOMS_ID |
"generics.select_atoms" |
| cct.interfaces.MoleculeInterface | ||
|---|---|---|
public static final java.lang.String |
CCSDEnergyProperty |
"CCSD Energy" |
public static final java.lang.String |
CCSDTEnergyProperty |
"CCSDT Energy" |
public static final java.lang.String |
ChargeProperty |
"Charge" |
public static final java.lang.String |
DipoleMomentProperty |
"Dipole" |
public static final java.lang.String |
EnergyThermCorrProperty |
"EnergyTC" |
public static final java.lang.String |
EnthalpyThermCorrProperty |
"EnthalpyTC" |
public static final java.lang.String |
ESPChargesProperty |
"ESP charges" |
public static final java.lang.String |
FrameGroupProperty |
"FrameGroup" |
public static final java.lang.String |
GibbsThermCorrProperty |
"GibbsTC" |
public static final java.lang.String |
ImaginaryFreqsProperty |
"ImaginaryFreqs" |
public static final java.lang.String |
LATTICE_PARAMETERS |
"LatticeParamaters" |
public static final java.lang.String |
LATTICE_VECTORS |
"LatticeVectors" |
public static final java.lang.String |
MP2EnergyProperty |
"MP2 Energy" |
public static final java.lang.String |
MP3EnergyProperty |
"MP3 Energy" |
public static final java.lang.String |
MP4DEnergyProperty |
"MP4D Energy" |
public static final java.lang.String |
MP4DQEnergyProperty |
"MP4DQ Energy" |
public static final java.lang.String |
MP4SDQEnergyProperty |
"MP4SDQ Energy" |
public static final java.lang.String |
MullikenChargesProperty |
"Mulliken charges" |
public static final java.lang.String |
MultiplicityProperty |
"Multiplicity" |
public static final java.lang.String |
NotesProperty |
"Notes" |
public static final java.lang.String |
OUTPUT_RESULTS |
"_OutputResults" |
public static final java.lang.String |
PeriodicBox |
"PeriodicBox" |
public static final java.lang.String |
PolarizabilityProperty |
"Polarizability" |
public static final java.lang.String |
ProgramProperty |
"Program" |
public static final java.lang.String |
RenderingStyle |
"RenderingStyle" |
public static final java.lang.String |
S_SquaredProperty |
"S**2" |
public static final java.lang.String |
SCFEnergyProperty |
"SCF Energy" |
public static final java.lang.String |
VersionProperty |
"Version" |
public static final java.lang.String |
VIBRATION_RENDERER |
"_VibrationRenderer" |
public static final java.lang.String |
ZeroPointCorrProperty |
"ZPCorr" |
| cct.interfaces.MoleculeRendererInterface | ||
|---|---|---|
public static final int |
LOAD_CANCELED |
0 |
public static final int |
MERGE_MOLECULE |
2 |
public static final int |
NEW_MOLECULE |
3 |
public static final int |
OVERWRITE_MOLECULE |
1 |
| cct.j3d.* |
|---|
| cct.j3d.ChemicalElementsColors | ||
|---|---|---|
static final java.lang.String |
ATOM_COLOR_SCHEME_2 |
"GaussView Scheme" |
static final java.lang.String |
ATOM_COLOR_SCHEME_JMOL |
"Jmol Scheme" |
static final java.lang.String |
ATOM_COLOR_SCHEME_RASMOL |
"Rasmol Scheme" |
static final java.lang.String |
ATOM_COLOR_SCHEME_RASMOL_NEW |
"Rasmol CPKnew Scheme" |
static final java.lang.String |
DEFAULT_ATOM_COLOR_SCHEME |
"Sybyl Scheme" |
| cct.j3d.GroupToVRML | ||
|---|---|---|
public static final double |
RADIANS_TO_DEGREES |
57.29577951308232 |
| cct.j3d.Java3dUniverse | ||
|---|---|---|
public static final java.lang.String |
ATOM_NODE |
"_AtomNode" |
public static final java.lang.String |
BOND_NODE |
"_BondNode" |
| cct.j3d.PovrayJava3d | ||
|---|---|---|
public static final double |
RADIANS_TO_DEGREES |
57.29577951308232 |
| cct.j3d.VerticesObjectProperties | ||
|---|---|---|
public static final int |
POINTS |
2 |
public static final int |
SOLID |
0 |
public static final int |
WIREFRAME |
1 |
| cct.j3d.ui.ColorGradientPanel | ||
|---|---|---|
static final int |
maxCharHeight |
25 |
static final int |
minFontSize |
6 |
| cct.math.* |
|---|
| cct.math.Crystal | ||
|---|---|---|
public static final double |
RADIANS_TO_DEGREES |
57.29577951308232 |
| cct.math.MathExpressionParser | ||
|---|---|---|
static final double |
DEGREES_TO_RADIANS |
0.017453292519943295 |
| cct.math.PointGroup | ||
|---|---|---|
static final float |
HALF_PI_FLOAT |
1.5707963705062866f |
static final float |
PI_FLOAT |
3.1415927410125732f |
static final float |
TWO_PI_FLOAT |
6.2831854820251465f |
| cct.modelling.* |
|---|
| cct.modelling.AtomGenerator | ||
|---|---|---|
static final double |
RIGHT_ANGLE |
1.5707963267948966 |
static final double |
TETRAHEDRAL_ANGLE |
1.9106119321581925 |
static final double |
TRIGONAL_ANGLE |
2.0943951023931953 |
| cct.modelling.AtomGeometry | ||
|---|---|---|
static final java.lang.String |
ATOM |
"Atom" |
static final java.lang.String |
BENDED_SINGLE_DOUBLE_ATOM |
"Bended Single-Double" |
public static final int |
LINEAR |
0 |
static final java.lang.String |
LINEAR_DOUBLE_DOUBLE_ATOM |
"Linear Double-Double" |
static final java.lang.String |
LINEAR_SINGLE_SINGLE_ATOM |
"Linear Single-Single" |
static final java.lang.String |
LINEAR_SINGLE_TRIPLE_ATOM |
"Linear Single-Triple" |
public static final int |
OCTAHEDRAL |
5 |
static final java.lang.String |
OCTAHEDRAL_ATOM |
"Octahedral" |
static final java.lang.String |
SEESAW_SHAPED_ATOM |
"Seesaw" |
public static final int |
SQUARE |
2 |
static final java.lang.String |
SQUARE_PLANAR_ATOM |
"Square planar" |
static final java.lang.String |
T_SHAPED_ATOM |
"T-shaped" |
static final java.lang.String |
TERMINAL_DOUBLE_ATOM |
"Terminal double" |
static final java.lang.String |
TERMINAL_SINGLE_ATOM |
"Terminal single" |
static final java.lang.String |
TERMINAL_TRIPLE_ATOM |
"Terminal triple" |
public static final int |
TETRAHEDRAL |
3 |
static final java.lang.String |
TETRAHEDRAL_SS_ATOM |
"Tetrahedral (SSLpLp)" |
static final java.lang.String |
TETRAHEDRAL_SSDD_ATOM |
"Tetrahedral (SSDD)" |
static final java.lang.String |
TETRAHEDRAL_SSS_ATOM |
"Tetrahedral (SSSLp)" |
static final java.lang.String |
TETRAHEDRAL_SSSD_ATOM |
"Tetrahedral (SSSD)" |
static final java.lang.String |
TETRAHEDRAL_SSSS_ATOM |
"Tetrahedral (SSSS)" |
public static final int |
TRIGONAL |
1 |
public static final int |
TRIGONAL_BIPYRAMID |
4 |
static final java.lang.String |
TRIGONAL_BIPYRAMID_ATOM |
"Trigonal bipyramid" |
static final java.lang.String |
TRIGONAL_PLANAR_DSS_ATOM |
"Trigonal Planar (DSS)" |
static final java.lang.String |
TRIGONAL_PLANAR_SAA_ATOM |
"Trigonal Planar (SAA)" |
static final java.lang.String |
TRIGONAL_PLANAR_SSS_ATOM |
"Trigonal Planar (SSS)" |
| cct.modelling.AtomProperties | ||
|---|---|---|
public static final int |
GEOMETRY_LINEAR |
1 |
public static final int |
GEOMETRY_TETRAHEDRAL |
3 |
public static final int |
GEOMETRY_TRIGONAL |
2 |
| cct.modelling.CCTAtomTypes | ||
|---|---|---|
static final java.lang.String |
BASE_ELEMENT_KEY |
"BASEELEMENT" |
static final java.lang.String |
COORDINATION_NUMBER_KEY |
"COORDNUMBER" |
static final java.lang.String |
DEFAULT_TYPE_KEY |
"DEFAULT" |
static final java.lang.String |
GEOMETRY_KEY |
"GEOMETRY" |
public static final java.lang.String |
LINEAR_GEOMETRY |
"linear" |
static final java.lang.String |
MAX_SINGLE_BONDS_KEY |
"MAXSINGLES" |
public static final java.lang.String |
TETRAHEDRAL_GEOMETRY |
"tetrahedral" |
public static final java.lang.String |
TRIGONAL_GEOMETRY |
"trigonal" |
static final float |
unsetDiValue |
-10000.0f |
static final java.lang.String |
VDW_DI_KEY |
"DI" |
static final java.lang.String |
VDW_RI_KEY |
"RI" |
| cct.modelling.ChemicalElements | ||
|---|---|---|
static final int |
numberOfElements |
110 |
| cct.modelling.FFMolecule | ||
|---|---|---|
public static final int |
HARMONIC_BOND_TERM |
0 |
| cct.modelling.FormatManager | ||
|---|---|---|
public static final java.lang.String |
SIMPLE_COORDINATE_BUILDER_TAG |
"simpleCoordinateBuilder" |
public static final java.lang.String |
SIMPLE_COORDINATE_BUILDERS_TAG |
"simpleCoordinateBuilders" |
public static final java.lang.String |
SIMPLE_COORDINATE_CLASS_TAG |
"class" |
public static final java.lang.String |
SIMPLE_COORDINATE_DESC_TAG |
"desc" |
public static final java.lang.String |
SIMPLE_COORDINATE_NAME_TAG |
"name" |
public static final java.lang.String |
SIMPLE_COORDINATE_PARSER_TAG |
"simpleCoordinateParser" |
| cct.modelling.MinimizeStructure | ||
|---|---|---|
static final int |
OPT_CARTESIAN_COORD |
0 |
static final int |
OPT_INTERNAL_COORD |
1 |
| cct.modelling.MolecularEnergy | ||
|---|---|---|
public static final int |
SFF_PARAMETERS |
0 |
| cct.modelling.MolecularFileFormats | ||
|---|---|---|
public static final java.lang.String |
adfInput |
"ADF Input" |
public static final java.lang.String |
adfOutput |
"ADF Output" |
public static final java.lang.String |
allFormats |
"All Files" |
public static final java.lang.String |
allMolecularExtensions |
"gjf;log;out;pdb;ent;mol2;cct;mol" |
public static final java.lang.String |
allMolecularFormats |
"Molecular File Formats" |
public static final java.lang.String |
amberCoordFormat |
"Amber coordinate/restart file" |
public static final java.lang.String |
amberLibFormat |
"Amber Lib file" |
public static final java.lang.String |
amberMdcrdFormat |
"Amber trajectory file" |
public static final java.lang.String |
amberPrepFormat |
"Amber PREP file" |
public static final java.lang.String |
amberPrmtopFormat |
"Amber prmtop file" |
public static final java.lang.String |
cctFileFormat |
"CCT File" |
public static final java.lang.String |
extension_ADF_Input |
"in;inp;dat;run" |
public static final java.lang.String |
extension_ADF_Output |
"out;log" |
public static final java.lang.String |
extension_All_Formats |
"*" |
public static final java.lang.String |
extension_Ambercrd |
"crd;rst;inpcrd" |
public static final java.lang.String |
extension_AmberLib |
"off;lib" |
public static final java.lang.String |
extension_AmberTraj |
"crd;rst;mdcrd" |
public static final java.lang.String |
extension_CCT |
"cct" |
public static final java.lang.String |
extension_G03_Cube |
"cub;cube" |
public static final java.lang.String |
extension_G03_FormCheckpoint |
"fchk;fch" |
public static final java.lang.String |
extension_G03_Fragment |
"frg" |
public static final java.lang.String |
extension_G03_GJF |
"gjf;com;inp;dat;in;g03" |
public static final java.lang.String |
extension_G03_Output |
"log;out" |
public static final java.lang.String |
extension_G03_Trajectory |
"trj;7" |
public static final java.lang.String |
extension_GAMESS_Input |
"inp" |
public static final java.lang.String |
extension_GAMESS_Output |
"out;log" |
public static final java.lang.String |
extension_Geom |
"gf" |
public static final java.lang.String |
extension_GRO |
"gro" |
public static final java.lang.String |
extension_GULP_Input |
"in;inp;gin;grs" |
public static final java.lang.String |
extension_GULP_Trajectory |
"trg;trj" |
public static final java.lang.String |
extension_MDL_Molfile |
"mol" |
public static final java.lang.String |
extension_Mol2 |
"mol2" |
public static final java.lang.String |
extension_MOPAC_Input |
"dat;inp;mop" |
public static final java.lang.String |
extension_MOPAC_Log |
"log" |
public static final java.lang.String |
extension_MOPAC_Output |
"out" |
public static final java.lang.String |
extension_PDB |
"pdb;ent;Z" |
public static final java.lang.String |
extension_Povray |
"pov" |
public static final java.lang.String |
extension_Prep |
"in;prepin;prep" |
public static final java.lang.String |
extension_Prmtop |
"top;prmtop" |
public static final java.lang.String |
extension_QChem_Input |
"in" |
public static final java.lang.String |
extension_QChem_Output |
"out;log" |
public static final java.lang.String |
extension_SIESTA_Input |
"fdf;dat;inp;in" |
public static final java.lang.String |
extension_VASP_POSCAR |
"dat;inp;poscar" |
public static final java.lang.String |
extension_VASP_Vasprun |
"xml" |
public static final java.lang.String |
extension_VRML |
"wrl" |
public static final java.lang.String |
extension_XMol_XYZ |
"xyz" |
public static final int |
format_ADF_Input |
22 |
public static final int |
format_ADF_Output |
27 |
public static final int |
format_AmberCrd |
11 |
public static final int |
format_G03_FormCheckpoint |
29 |
public static final int |
format_G03_Trajectory |
23 |
public static final int |
format_GAMESS_Input |
12 |
public static final int |
format_GAMESS_Output |
14 |
public static final int |
format_GRO |
9 |
public static final int |
format_GULP_Input |
24 |
public static final int |
format_GULP_Trajectory |
25 |
public static final int |
format_MDL_Molfile |
8 |
public static final int |
format_MOPAC_Input |
21 |
public static final int |
format_MOPAC_Log |
15 |
public static final int |
format_MOPAC_Output |
16 |
public static final int |
format_Povray |
17 |
public static final int |
format_Prmtop |
10 |
public static final int |
format_QChem_Input |
19 |
public static final int |
format_QChem_Output |
20 |
public static final int |
format_SIESTA_Input |
28 |
public static final int |
format_VASP_Poscar |
18 |
public static final int |
format_VASP_Vasprun |
26 |
public static final int |
format_XMol_XYZ |
7 |
public static final int |
formatCCT |
5 |
public static final int |
formatG03_Cube |
13 |
public static final int |
formatG03_Fragment |
6 |
public static final int |
formatG03_GJF |
1 |
public static final int |
formatG03_Output |
2 |
public static final int |
formatPDB |
3 |
public static final int |
formatTripos_Mol2 |
4 |
public static final int |
formatUnknown |
0 |
public static final java.lang.String |
gamessInput |
"GAMESS Input" |
public static final java.lang.String |
gamessOutput |
"GAMESS Output" |
public static final java.lang.String |
gaussian03Cube |
"Geometry from G03 cube" |
public static final java.lang.String |
gaussian03GJF |
"Gaussian G03 Input" |
public static final java.lang.String |
gaussian03Output |
"Gaussian G03 Output" |
public static final java.lang.String |
gaussianFormCheckpoint |
"Gaussian G03 Formatted Checkpoint" |
public static final java.lang.String |
gaussianFragment |
"Gaussian G03 Fragment" |
public static final java.lang.String |
gaussianTrajectory |
"Gaussian G03 Trajectory" |
public static final java.lang.String |
geomFormat |
"Geom Format File" |
public static final java.lang.String |
gromacsGROFormat |
"Gromacs coordinate file" |
public static final java.lang.String |
gulpInputFormat |
"GULP Input file" |
public static final java.lang.String |
gulpTrajectoryFormat |
"GULP Trajectory file" |
public static final java.lang.String |
mdlMolfileFormat |
"MDL Molfile File" |
public static final java.lang.String |
mopacInput |
"Mopac Input File" |
public static final java.lang.String |
mopacLog |
"Mopac2002 Log File" |
public static final java.lang.String |
mopacOutput |
"Mopac Output File" |
public static final java.lang.String |
pdbFile |
"PDB" |
public static final java.lang.String |
povrayFormat |
"Povray file (in development)" |
public static final java.lang.String |
qchemFormat |
"QChem Input file" |
public static final java.lang.String |
qchemOutputFormat |
"QChem Output file" |
public static final java.lang.String |
siestaInputFormat |
"SIESTA Input file (in development)" |
public static final java.lang.String |
triposMol2 |
"Tripos Mol2" |
public static final java.lang.String |
vaspPoscarFormat |
"VASP Poscar file" |
public static final java.lang.String |
vaspVasprunFormat |
"VASP Vasprun file" |
public static final java.lang.String |
vrmlFormat |
"VRML Format File (in development)" |
public static final java.lang.String |
xmolXYZFileFormat |
"XMol XYZ File" |
| cct.modelling.OperationsOnAtoms | ||
|---|---|---|
public static final int |
FIXED_ATOM |
0 |
public static final int |
ROTATE_ATOM |
4 |
public static final int |
ROTATE_GROUP |
1 |
public static final int |
RULE_DIFFERENCE |
1 |
public static final int |
RULE_INTERSECTION |
2 |
public static final int |
RULE_UNION |
0 |
public static final int |
SELECT_ATOMS |
0 |
public static final int |
SELECT_MOLECULES |
2 |
public static final int |
SELECT_MONOMERS |
1 |
public static final int |
SELECTED_ADD_ATOMS |
4 |
public static final int |
SELECTED_ADD_FRAGMENT |
12 |
public static final int |
SELECTED_ADD_MOLECULE |
11 |
public static final int |
SELECTED_CHANGE_ATOM_LABELS_COLOR |
17 |
public static final int |
SELECTED_CHANGE_ATOM_LABELS_SIZE |
16 |
public static final int |
SELECTED_CREATE_CENTROID |
13 |
public static final int |
SELECTED_DELETE_ATOMS |
2 |
public static final int |
SELECTED_DISPLAY_ATOMS |
0 |
public static final int |
SELECTED_FILL_VALENCES_WITH_HYDROGENS |
10 |
public static final int |
SELECTED_LABEL_ATOMS |
3 |
public static final int |
SELECTED_MODIFY_ANGLES |
8 |
public static final int |
SELECTED_MODIFY_ATOMS |
6 |
public static final int |
SELECTED_MODIFY_BONDS |
7 |
public static final int |
SELECTED_MODIFY_DIHEDRALS |
9 |
public static final int |
SELECTED_NOTHING |
-1 |
public static final int |
SELECTED_SOLVATE_CAP |
14 |
public static final int |
SELECTED_SOLVATE_SHELL |
15 |
public static final int |
SELECTED_UNDISPLAY_ATOMS |
1 |
public static final int |
SELECTED_UNLABEL_ATOMS |
5 |
public static final int |
SELECTION_FOUR_ATOMS_ONLY |
5 |
public static final int |
SELECTION_ONE_ATOM_ONLY |
1 |
public static final int |
SELECTION_SPOT_ONLY |
2 |
public static final int |
SELECTION_THREE_ATOMS_ONLY |
4 |
public static final int |
SELECTION_TWO_ATOMS_ONLY |
3 |
public static final int |
SELECTION_UNLIMITED |
0 |
public static final int |
TRANSLATE_ATOM |
3 |
public static final int |
TRANSLATE_GROUP |
2 |
| cct.modelling.StructureManager | ||
|---|---|---|
static final double |
ONE_BOHR |
0.529177249 |
| cct.mopac.* |
|---|
| cct.mopac.Mopac | ||
|---|---|---|
static final float |
DEGREES_TO_RADIANS |
0.01745329238474369f |
| cct.mopac.MopacOutput | ||
|---|---|---|
static final float |
ONE_BOHR_FLOAT |
0.5291772484779358f |
| cct.pdb.* |
|---|
| cct.pdb.PDBDictionary | ||
|---|---|---|
static final java.lang.String |
ATOM_CCTTYPE_ATTRIBUTE |
"cct-type" |
static final java.lang.String |
ATOM_ELEMENT |
"Atom" |
static final java.lang.String |
ATOM_ELEMENT_ATTRIBUTE |
"element" |
static final java.lang.String |
ATOM_NAME_ATTRIBUTE |
"name" |
static final java.lang.String |
BOND_A1_ATTRIBUTE |
"a1" |
static final java.lang.String |
BOND_A2_ATTRIBUTE |
"a2" |
static final java.lang.String |
BOND_ELEMENT |
"Bond" |
static final java.lang.String |
DICTIONARY_NAME_ATTRIBUTE |
"name" |
static final java.lang.String |
RESIDUE_ELEMENT |
"Residue" |
static final java.lang.String |
RESIDUE_NAME_ATTRIBUTE |
"name" |
static final java.lang.String |
ROOT |
"PDBDictionary" |
| cct.poly.* |
|---|
| cct.poly.CUBETABLE | ||
|---|---|---|
static final int |
BF |
9 |
static final int |
BN |
8 |
static final int |
LB |
0 |
static final int |
LF |
3 |
static final int |
LN |
2 |
static final int |
LT |
1 |
static final int |
RB |
4 |
static final int |
RF |
7 |
static final int |
RN |
6 |
static final int |
RT |
5 |
static final int |
TF |
11 |
static final int |
TN |
10 |
| cct.povray.* |
|---|
| cct.povray.Povray | ||
|---|---|---|
public static final int |
PARALLEL_PROJECTION |
0 |
public static final int |
PERSPECTIVE_PROJECTION |
1 |
public static final double |
RADIANS_TO_DEGREES |
57.29577951308232 |
| cct.qchem.* |
|---|
| cct.qchem.QChem | ||
|---|---|---|
static final java.lang.String |
basisSection |
"$BASIS" |
static final java.lang.String |
batchSeparator |
"@@@" |
static final java.lang.String |
commentSection |
"$COMMENT" |
static final float |
DEGREES_TO_RADIANS |
0.01745329238474369f |
static final java.lang.String |
ecpSection |
"$ECP" |
static final java.lang.String |
endSection |
"$END" |
static final java.lang.String |
external_chargesSection |
"$EXTERNAL_CHARGES" |
static final java.lang.String |
intraculeSection |
"$INTRACULE" |
static final java.lang.String |
isotopesSection |
"$ISOTOPES" |
static final java.lang.String |
moleculeSection |
"$MOLECULE" |
static final java.lang.String |
multipole_fieldSection |
"$MLTIPOLE_FIELD" |
static final java.lang.String |
nboSection |
"$NBO" |
static final java.lang.String |
occupiedSection |
"$OCCUPIED" |
static final double |
ONE_BOHR |
0.529177249 |
static final java.lang.String |
optSection |
"$OPT" |
static final java.lang.String |
plotsSection |
"$PLOTS" |
static final java.lang.String |
remSection |
"$REM" |
static final java.lang.String |
svpirfSection |
"$SVPIRF" |
static final java.lang.String |
svpSection |
"$SVP" |
static final java.lang.String |
van_der_waalsSection |
"$VAN_DER_WAALS" |
static final java.lang.String |
xcSection |
"$XC" |
| cct.sff.* |
|---|
| cct.sff.SimpleForceField | ||
|---|---|---|
static final java.lang.String |
Default_SFF_File |
"SFF.txt" |
public static final float |
FK_GRAD_2_RAD_FACTOR |
3282.806396484375f |
public static final int |
SP_SP_TORSION |
1 |
public static final int |
SP_SP2_TORSION |
2 |
public static final int |
SP_SP3_TORSION |
3 |
public static final int |
SP2_SP2_TORSION |
4 |
public static final int |
SP2_SP3_TORSION |
5 |
public static final int |
SP3_SP3_TORSION |
6 |
| cct.siesta.* |
|---|
| cct.siesta.SiestaInput | ||
|---|---|---|
public static final java.lang.String |
BLOCK_TOKEN |
"%block" |
| cct.siesta.SiestaInterface | ||
|---|---|---|
public static final java.lang.String |
SIESTA_INTERFACE |
"_Siesta Interface" |
public static final java.lang.String |
SIESTA_SPECIES_LABEL |
"_Siesta Species Label" |
public static final java.lang.String |
SIESTA_SPECIES_NUMBER |
"_Siesta Species Number" |
| cct.ssh.* |
|---|
| cct.ssh.SSHPanel | ||
|---|---|---|
static final java.lang.String |
CUSTOM_PROPERTY_FILE |
"custom.properties" |
static final java.lang.String |
DEFAULT_HOST |
"defaultHost" |
static final java.lang.String |
DIVIDER |
"@" |
static final java.lang.String |
HOST_EDITABLE |
"hostEditable" |
static final java.lang.String |
SSHHostKey |
"ssh-host" |
static final java.lang.String |
SSHUserKey |
"ssh-user" |
| cct.ssh.SSHServiceProvider | ||
|---|---|---|
static final java.lang.String |
CUSTOM_PROPERTY_FILE |
"custom.properties" |
static final java.lang.String |
DIVIDER |
"@" |
static final java.lang.String |
JOB_KILL_COMMAND |
"jobKillCommand" |
static final java.lang.String |
JOB_STATUS_COMMAND |
"jobStatusCommand" |
static final java.lang.String |
JOB_SUBMIT_COMMAND |
"jobSubmitCommand" |
static final java.lang.String |
SSH2_HOST |
"ssh2Host" |
static final java.lang.String |
SSH2_PORT |
"ssh2Port" |
static final java.lang.String |
SSH2_USER_NAME |
"ssh2UserName" |
| cct.tools.* |
|---|
| cct.tools.CCTParser | ||
|---|---|---|
static final java.lang.String |
INTERNAL_PROPERTY |
"_" |
| cct.tools.FortranNamelist | ||
|---|---|---|
static final int |
READY_FOR_NEW_OPTION |
0 |
static final int |
WAITING_FOR_VALUE |
1 |
| cct.tools.FragmentDictionaryParser | ||
|---|---|---|
static final java.lang.String |
DICTIONARY_TAG |
"fragmentDictionary" |
static final java.lang.String |
FRAGMENT_TAG |
"fragment" |
| cct.tools.GridProviders | ||
|---|---|---|
public static final java.lang.String |
PROVIDER_KEY |
"provider" |
public static final java.lang.String |
PROVIDERS_PROPERTY_FILE |
"cct.grid.grid-providers" |
public static final java.lang.String |
SCRIPT_SUBMITTER_ARG |
"ScriptSubmitter" |
public static final java.lang.String |
SUBMITTER_KEY |
"submitter" |
| cct.tools.ImageTools | ||
|---|---|---|
public static final java.lang.String |
IMAGE_BMP |
"bmp" |
public static final java.lang.String |
IMAGE_JPEG |
"jpg" |
public static final java.lang.String |
IMAGE_PNG |
"png" |
public static final java.lang.String |
IMAGE_TIFF |
"tiff" |
static final java.lang.String |
LastSaveImagePWD |
"LastSaveImageDirectory" |
| cct.tools.PostMessageType | ||
|---|---|---|
static final java.lang.String |
bugKey |
"bug" |
static final java.lang.String |
suggestionKey |
"suggest" |
| cct.tools.SimpleParserFactory | ||
|---|---|---|
static final double |
ONE_BOHR |
0.529177249 |
| cct.tools.Utils | ||
|---|---|---|
static final java.lang.String |
CUSTOM_PROPERTY_FILE |
"custom.properties" |
static final java.lang.String |
DIVIDER |
"@" |
| cct.tools.filebrowser.ConfirmFileOverwriteDialog | ||
|---|---|---|
public static final int |
CANCEL |
4 |
public static final int |
NO |
2 |
public static final int |
NO_TO_ALL |
3 |
public static final int |
YES |
0 |
public static final int |
YES_TO_ALL |
1 |
| cct.tools.filebrowser.ConnectHostDialog | ||
|---|---|---|
public static final int |
CANCEL |
1 |
public static final int |
CONNECT |
0 |
| cct.tools.filebrowser.FileChooserDialog | ||
|---|---|---|
public static final int |
CANCEL |
1 |
public static final int |
CONFIRM |
0 |
| cct.tools.filebrowser.FileName | ||
|---|---|---|
public static final int |
FILE |
1 |
public static final int |
FOLDER |
0 |
| cct.tools.filebrowser.FilePropertiesDialog | ||
|---|---|---|
static final int |
CANCEL |
1 |
static final int |
SET |
0 |
| cct.tools.filebrowser.FTPManager | ||
|---|---|---|
static final java.lang.String |
GridFTP_Protocol |
"gridftp" |
static final java.lang.String |
SFTP_Protocol |
"sftp" |
| cct.tools.filebrowser.SFTPBrowser | ||
|---|---|---|
static final java.lang.String |
DeleteItem |
"Delete" |
static final java.lang.String |
DownloadItem |
"Download" |
static final java.lang.String |
GoToForlderItem |
"Go to Folder..." |
static final java.lang.String |
NewForlderItem |
"New Folder" |
static final java.lang.String |
PropertiesItem |
"Properties" |
static final java.lang.String |
RefreshItem |
"Refresh" |
static final java.lang.String |
SelectAllItem |
"Select All" |
static final java.lang.String |
upDirectoryItem |
"Up a Directory" |
static final java.lang.String |
UploadDialogItem |
"Upload Dialog" |
| cct.tools.filebrowser.cct.tools.filebrowser.SFTPBrowser.FileTranferWorker | ||
|---|---|---|
final int |
MAX |
10 |
| cct.tools.filebrowser.SFTPFileChooserDialog | ||
|---|---|---|
final int |
MAX |
10 |
| cct.tools.filebrowser.ShadowSFTPManager | ||
|---|---|---|
static final java.lang.String |
HOST_KEY |
"host" |
static final int |
maxStroredHosts |
10 |
static final java.lang.String |
NEW_HOST |
"New host" |
static final java.lang.String |
NUMBER_OF_HOSTS_KEY |
"numberOfHosts" |
| cct.tools.filebrowser.TableSorter | ||
|---|---|---|
public static final int |
ASCENDING |
1 |
public static final int |
DESCENDING |
-1 |
public static final int |
NOT_SORTED |
0 |
| cct.tools.ui.JPEGOptionsPanel | ||
|---|---|---|
static final int |
defaultJPEGQuality |
80 |
| cct.tools.ui.JShowText | ||
|---|---|---|
public static final int |
QUIT_WITH_SAVING |
1 |
public static final int |
QUIT_WITHOUT_SAVING |
0 |
| cct.tools.ui.PostMessagePanel | ||
|---|---|---|
static final java.lang.String |
emailKey |
"email" |
static final java.lang.String |
nameKey |
"name" |
| cct.vasp.* |
|---|
| cct.vasp.Vasp | ||
|---|---|---|
static final int |
CARTESIAN_COORDINATES |
0 |
static final int |
DIRECT_COORDINATES |
1 |
| cct.vasp.VasprunXML | ||
|---|---|---|
public static final java.lang.String |
TOTAL_ENERGY_KEY |
"total" |
| cct.vecmath.* |
|---|
| cct.vecmath.vPoint3f | ||
|---|---|---|
public static final double |
DEGREES_TO_RADIANS |
0.017453292519943295 |
public static final float |
PI_FLOAT |
3.1415927410125732f |
public static final double |
RADIANS_TO_DEGREES |
57.29577951308232 |
|
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